Rhistory files in my working directory and restarting RStudio, but it didn't help. This behavior started very recently, possibly corresponding to the installation of the package sqldf, which does appear to force-open the XQuartz app when it's loaded, although I don't know how it could be causing XQuartz to open before the library is even loaded into the current session. (I do have the colorspace package installed but for me XQuartz starts up immediately upon starting RStudio, not after a particular library is loaded.) The only thing I could find related to this issue was this stackoverflow question: loading ggplot2 (colorspace, actually) opens up x11. How can I stop this from happening? (It's annoying!) Lately, whenever I launch RStudio, the XQuartz app also automatically launches. XQuartz opens automatically when RStudio opens
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